Speaking USA:
If the wrong courtesy runner is placed on 2nd, put the correct one out there.
Case book:
PLAY 5.11-2 (Female and Men 40 & 45-O FP Only) In the eighth inning, an incorrect runner is at 2B to start the inning.
The incorrect runner steals 3B. The umpire is notified of the incorrect...
As TMiB states, the coach has to start with a DP/Flex lineup. To SBmom8992's question, the starting pitcher and her replacement do not have to be in the DP/Flex spots, although it's commonly done that way.
As CoachJD alludes, the box score in question makes more sense if Torres is the DP and, at the plate meeting, she moves into F9 and Lee becomes the OP. I have not seen designation in the play-by-play for a player becoming OP, just musical chairs for position changes. The <crappy> broadcast...
Substitutes are allowed for substitutes and they are tied to the starter's slot in the batting order.
Starters have one re-entry if it has not been previously used. Substitutes may re-enter if they have re-entry rights, i.e, if it's allowed by code and has not been used (e.g. USA, NFHS.)
I saw it. I understand your point. I don't think the software "they" are using has a proper label for substitutions and position changes, particularly a player going to offense only in softball. Looking through box scores, you'll often see PR, PH, and even DH. The "Software" is made for...